91 publications found

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  • 2018
    Kishore K.iit , *Pelizzola M.iit

    Identification of differentially methylated regions in the genome of Arabidopsis thaliana

    Methods in molecular biology (Clifton, N.J.), vol. 1675, pp. 61-69
    Book Chapter
  • 2017
    *Melloni G.E.M.iit , *Mazzarella L. , *Bernard L. , *Bodini M.iit , *Russo A. , *Luzi L. , *Pelicci P.G. , *Riva L.iit

    A knowledge-based framework for the discovery of cancer-predisposing variants using large-scale sequencing breast cancer data

    Breast Cancer Research, vol. 19, (no. 1)
    Article
  • 2017
    Noberini R.iit , *Bonaldi T.

    A Super-SILAC Strategy for the Accurate and Multiplexed Profiling of Histone Posttranslational Modifications

    Methods in Enzymology, vol. 586, pp. 311-332
    Book Chapter
  • 2017
    Donato E.iit , Croci O.iit , Sabo A.iit , Muller H.iit , Morelli M.J.iit , Pelizzola M.iit , *Campaner S.iit

    Compensatory RNA polymerase 2 loading determines the efficacy and transcriptional selectivity of JQ1 in Myc-driven tumors

    Leukemia, vol. 31, (no. 2), pp. 479-490
    Article
  • 2017
    Pistore C. , Giannoni E. , Colangelo T. , Rizzo F. , Magnani E. , Muccillo L. , Giurato G. , Mancini M. , Rizzo S. , Riccardi M. , Sahnane N. , Del Vescovo V. , Kishore K.iit , Mandruzzato M. , MacChi F. , Pelizzola M.iit , Denti M.A. , Furlan D. , Weisz A. , Colantuoni V. , Chiarugi P. , *Bonapace I.M.

    DNA methylation variations are required for epithelial-to-mesenchymal transition induced by cancer-associated fibroblasts in prostate cancer cells

    Oncogene, vol. 36, (no. 40), pp. 5551-5566
    Article
  • 2017
    Ghini F. , Marzi M.J.iit , *Nicassio F.iit

    Endogenous transcripts control miRNA levels and activity in mammalian cells by a target-induced miRNA degradation mechanism (TIMD)

    2nd International Conference on the Long and the Short of Non-Coding RNAs
    Poster
  • 2017
    Scalet D. , Balestra D. , Rohban S.iit , Bovolenta M. , Perrone D. , Bernardi F. , Campaner S.iit , *Pinotti M.

    Exploring Splicing-Switching Molecules For Seckel Syndrome Therapy

    Biochimica et Biophysica Acta - Molecular Basis of Disease, vol. 1863, (no. 1), pp. 15-20
    Article
  • 2017
    Tonelli C. , Morelli M.J.iit , Sabo A.iit , Verrecchia A. , Rotta L. , Capra T. , Bianchi S.iit , Campaner S.iit , *Amati B.iit

    Genome-wide analysis of p53-regulated transcription in Myc-driven lymphomas

    Oncogene, vol. 36, (no. 21), pp. 2921-2929
    Article
  • 2017
    De Pretis S.iit , Kress T.R.iit , Morelli M.J.iit , Sabo A.iit , Locarno C.iit , Verrecchia A. , Doni M. , Campaner S.iit , Amati B.iit , *Pelizzola M.iit

    Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation

    Genome Research, vol. 27, (no. 10), pp. 1658-1664
    Article
  • 2017
    *Mukherjee N. , Calviello L. , Hirsekorn A. , De Pretis S.iit , Pelizzola M.iit , *Ohler U.

    Integrative classification of human coding and noncoding genes through RNA metabolism profiles

    Nature Structural and Molecular Biology, vol. 24, (no. 1), pp. 86-96
    Article
  • 2017
    *Marzi M.J.iit , Tordonato C. , *Nicassio F.iit

    Long non-coding RNAs (lncRNAs) and stem cells properties in breast cancer

    Keystone Symposia: Noncoding RNAs: From Disease to Targeted Therapeutics (J5)
    Poster
  • 2017
    Marinaro F.iit , Marzi M.J.iit , Hoffmann N.iit , Amin H.iit , *Pelizzoli R.iit , Niola F.iit , Nicassio F.iit , *De Pietri Tonelli D.iit

    MicroRNA-independent functions of DGCR8 are essential for neocortical development and TBR1 expression

    EMBO Reports, vol. 18, (no. 4), pp. 603-618
    Article
  • 2017
    Jalili V. , Matteucci M. , Morelli M.J.iit , *Masseroli M.

    MuSERA: Multiple sample enriched region assessment

    Briefings in Bioinformatics, vol. 18, (no. 3), pp. 367-381
    Article
  • 2017
    Richichi C. , Fornasari L. , Melloni G.E.M.iit , Brescia P. , Patane M. , Del Bene M. , Mustafa D.A.M. , Kros J.M. , Pollo B. , Pruneri G. , Sciandivasci A. , Munzone E. , Dimeco F. , Pelicci P.G. , *Riva L.iit , *Pelicci G.

    Mutations targeting the coagulation pathway are enriched in brain metastases

    Scientific Reports, vol. 7, (no. 1)
    Article
  • 2017
    Rava M.iit , D'Andrea A. , Doni M. , Kress T.R.iit , Ostuni R. , Bianchi V.iit , Morelli M.J.iit , Collino A. , Ghisletti S. , Nicoli P. , Recordati C. , Iascone M. , Sonzogni A. , D'Antiga L. , Shukla R. , Faulkner G.J. , Natoli G. , Campaner S.iit , *Amati B.iit

    Mutual epithelium-macrophage dependency in liver carcinogenesis mediated by ST18

    Hepatology, vol. 65, (no. 5), pp. 1708-1719
    Article
  • 2017
    Galeota E.iit , *Pelizzola M.iit

    Ontology-based annotations and semantic relations in large-scale (epi)genomics data

    Briefings in Bioinformatics, vol. 18, (no. 3), pp. 403-412
    Article
  • 2017
    *Noberini R.iit , *Longuespee R. , *Richichi C. , *Pruneri G. , *Kriegsmann M. , *Pelicci G. , *Bonaldi T.

    PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples

    Clinical Epigenetics, vol. 9, (no. 1)
    Article
  • 2017
    Ronchini C.iit , Brozzi A. , Riva L.iit , Luzi L. , Gruszka A.M. , Melloni G.E.M. , Scanziani E. , Dharmalingam G. , Mutarelli M. , Belcastro V. , Lavorgna S. , Rossi V. , Spinelli O. , Biondi A. , Rambaldi A. , Lo-Coco F. , di Bernardo D. , Pelicci P.G.

    PML-RARA-associated cooperating mutations belong to a transcriptional network that is deregulated in myeloid leukemias

    Leukemia
    Article in Press
  • 2017
    Marzi M.J.iit , Ghini F. , Rubolino C. , Simeone I.iit , *Nicassio F.iit

    Study of Target-Induced miRNA Degradation by CRISPR/Cas9 deletion of miRNA responsive elements

    XVI CONGRESSO REGIONALE SISA-XI CONGRESSO NAZIONALE SITeCS
    Abstract Report
  • 2016
    *Marzi M.J.iit , *Ghini F.iit , Cerruti B.iit , De Pretis S.iit , *Bonetti P.iit , Giacomelli C.iit , Gorski M.M. , Kress T.iit , Pelizzola M.iit , Muller H.iit , Amati B.iit , Nicassio F.iit

    Degradation dynamics of micrornas revealed by a novel pulse-chase approach

    Genome Research, vol. 26, (no. 4), pp. 554-565
    Article
  • 2016
    *Ceol A.iit , *Verhoef L.G.G.C.iit , *Wade M.iit , *Muller H.iit

    Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks

    BMC Bioinformatics, vol. 17, (no. 4)
    Article
  • 2016
    Bianchi V.iit , Ceol A.iit , Ogier A.G.E. , De Pretis S.iit , Galeota E.iit , Kishore K.iit , Bora P.iit , Croci O.iit , Campaner S.iit , Amati B.iit , Morelli M.J.iit , *Pelizzola M.iit

    Integrated systems for NGS data management and analysis: Open issues and available solutions

    Frontiers in Genetics, vol. 7, (no. MAY)
    Article
  • 2016
    *Carugo A. , Genovese G. , Seth S. , Nezi L. , Rose J.L. , Bossi D. , Cicalese A. , Shah P.K. , Viale A. , Pettazzoni P.F. , Akdemir K.C. , Bristow C.A. , Robinson F.S. , Tepper J. , Sanchez N. , Gupta S. , Estecio M.R. , Giuliani V. , Dellino G.I. , Riva L.iit , Yao W. , Di Francesco M.E. , Green T. , D'Alesio C. , Corti D. , Kang Y. , Jones P. , Wang H. , Fleming J.B. , Maitra A. , Pelicci P.G. , Chin L. , DePinho R.A. , *Lanfrancone L. , *Heffernan T.P. , *Draetta G.F.

    In Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer

    Cell Reports, vol. 16, (no. 1), pp. 133-147
    Article
  • 2016
    Bossi D. , Cicalese A. , Dellino G.I. , Luzi L. , Riva L.iit , D'Alesio C. , Diaferia G.R. , Carugo A. , Cavallaro E. , Piccioni R. , Barberis M. , Mazzarol G. , Testori A. , Punzi S. , Pallavicini I. , Tosti G. , Giaco L. , Melloni G. , Heffernan T.P. , Natoli G. , Draetta G.F. , Minucci S. , Pelicci P. , *Lanfrancone L.

    In Vivo genetic screens of patient-derived tumors revealed unexpected frailty of the transformed phenotype

    Cancer Discovery, vol. 6, (no. 6), pp. 650-663
    Article
  • 2016
    *Melloni G.E.M.iit , de Pretis S.iit , Riva L.iit , *Pelizzola M.iit , *Ceol A.iit , *Costanza J.iit , *Muller H.iit , *Zammataro L.iit

    LowMACA: Exploiting protein family analysis for the identification of rare driver mutations in cancer

    BMC Bioinformatics, vol. 17, (no. 1)
    Article