Paola Bonetti

Post Doc
Senior post-doc

Research Lines

Genomic Science

Center

CGS@SEMM Milano

Contacts

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About

Education

  • 07/2004-09/2008 Ph.D. in Molecular Medicine                                                                            

         European School of Molecular Medicine (SEMM), Milan, Italy

  • 02/2003 Laurea in Pharmaceutical Biotechnology (5 years), grade: 110/100 summa cum laude                                                          

        Universita’ degli Studi , Facolta’ di Farmacia, Milan, Italy

  • 07/1997 Scientific Lyceum , grade: 60/60                                                                                                                                          

         Liceo Scientifico “P.L. Nervi”, Morbegno (SO), Italy 

Working Experience

11/2012-present  Post-doctoral position in Dr. Nicassio’s laboratory , IIT, CGS@SEMM, Milan, Italy                                                                                                                                                            

  • Research topics: study of the role of microRNAs and non-coding RNAs  in breast cancer; pre-clinical studies of new compounds against breast cancer in in vitro and in vivo models.

08/2013-10/2013 Visiting Scientist in Dr. Ventura’s laboratory, MSKCC, NewYork, US                                                                                                                                                                                

  • Research topics: study of the role of microRNA-34a in mammary compartment in mouse models

09/2010-10/2012 Post-doctoral position in the Lymphoma Genomics group, under the supervision of Dr. Bertoni,  IOR, Bellinzona, CH                                                                                                  

  • Research topics: identification of genomic and epigenetic alterations in B-cell lymphomas and functional characterization; pre-clinical studies of new anti-lymphoma compounds in in vitro and in vivo models.

10/2008-08/2010 Post-doctoral position in the group of Prof. PG Pelicci , IEO, Milan,Italy                                                                                                                              

  • Research topic: study of the role of the lymphoid-associated NPM-ALK oncogene in the pretumoral stage

07/2004-09/2008 Ph.D. Student in the group of Prof. PG Pelicci  , IEO, Milan,Italy                                                                                                                                                                       

Projects

Non-coding RNAs in triple negative breast cancer: new perspectives in neoadjuvant chemotherapy

LAY PUBLIC SUMMARY

Characterised by a very negative prognosis, TNBC (triple negative breast cancer) is the most aggressive breast cancer subtype. Due to the lack of targeted therapy, TNBC patients (about 15% of all breast cancer cases) must usually undergo standard chemotherapy with about half of them displaying resistance to it and developing metastasis. Identifying new targets that can be used in the treatment of TNBC is therefore crucial. To this aim, we are investigating the role of non-coding RNAs. These are RNA molecules without protein-coding potential, of which 2 main types exist: short (microRNAs, 20-22bp) and long RNAs (lncRNAs, >200nt). Despite being a recent discovery, these molecules have been significantly implicated in cancer and  depicted as having a considerable diagnostic and therapeutic potential. What are the most promising non-coding RNAs ? And how do they serve their functions?

PROJECT DESCRIPTION

Standard care therapy is reported as failing in 50% of TNBC cases. This failure does not appear to be associated with distinctive genetic features, but rather with the acquisition of an inducible and reversible transcriptional phenotype that enables tumor cells to enter a drug-tolerant state. Due to the transient nature of this response and the intrinsic heterogeneity of cancer, the molecular determinants of such adaptive transcriptional response have so far proven extremely challenging to be identified and characterized. 

To overcome these limitations, we set up a cellular model reproducing TNBC cancer cells chemo-adaptation both in vitroand in vivo and investigated transcriptional evolution through the combination of genomics, cellular barcoding and single cell analysis. A number of non-coding RNAs stood out in our analysis and provided new leads in the investigation of the flexible and dynamic control of gene expression that occurs during the adaptive response. We are investigating the role played by these non-coding RNAs in the evolution of breast cancer and, in particular, during the response to treatment.

By using various approaches (i.e. CRISPR/cas9 based genome editing, shRNA, siRNAs, overexpression) in ourin vitro and in vivo models, we plan to manipulate non-coding RNAs levels ad hocwhile administering chemotherapeutic drugs and hence evaluate the outcome in terms of cancer phenotypes, tumor growth and metastatic spread. In addition, we plan to investigate the mechanisms of action of the most promising non-coding RNAs using both biochemical (i.e. RAP, ChiRP) and imaging (DNA/RNA FISH) approaches.

Our results will shed light on the mechanisms of chemo-adaptation in TNBC, pinpointing lncRNAs as new diagnostic molecules and/or potential candidates in combinatorial therapies.

PREVIOUS FINDINGS

In the recent past, we focused our attention on microRNAs that are involved in the regulation of mammary stem cells in both the physiological (stem cells of the mammary gland - MaSC) and the pathological context (stem cells of breast cancer - CSC). We found that miR-34 family members are absent in stem cells (both MaSCs and CSCs) and have a pro-differentiating role in luminal compartment. In TNBC, miR-34 forced expression significantly reduces the Cancer Stem Cell component and tumor growth, indicating miR-34 as a promising target in future therapies for TNBC (Bonetti et al., Oncogene 2018). In order to assess if miR-34 can be used as a therapeutic tool, we delivered it directly to tumors using a biocompatible system. We loaded miR-34 molecules onto silica nanoparticles and observed that the efficient delivery of active miR-34 both to cells and to mice harboring tumors, lead to a significant reduction in tumor growth (Panebianco et al., Nanomedicine: Nanotechnology, Biology, and Medicine, 2019).

 

COLLABORATIONS

Identification of lncRNA chemoresistance signature in AML

In collaboration with the European Institute of Oncology (IEO), we are working on a project aimed at identifying the molecular determinants involved in the way Acute Myeloid Leukemia (AML) patients respond to standard chemotherapy. 

In particular, we aim at identifying long non-coding RNAs in patients that are resistant to standard chemotherapy and at correlating these data with mutational profiles from the same patients. In addition, we want to investigate the role of lncRNAs as biomarkers for early diagnosis of refractoriness and explore their possible therapeutic applications in AML.

IIT Publications

  • 2019
  • Panebianco F., Climent M., Malvindi M.A., Pompa P.P., Bonetti P.iit, Nicassio F.iit
    DOI

    Delivery of biologically active miR-34a in normal and cancer mammary epithelial cells by synthetic nanoparticles

    Nanomedicine: Nanotechnology, Biology, and Medicine, vol. 19, pp. 95-105
  • Santoro A., Vlachou T., Luzi L., Melloni G., Mazzarella L., DElia E., Aobuli X., Pasi M.C., Reavie L., Bonetti P.iit, Punzi S., Casoli L., Sabò A., Moroni C., Dellino I.G., Amati B., Nicassio F., Lanfrancone L., Pelicci P.G.
    DOI

    p53 Loss in Breast Cancer Leads to Myc Activation,Increased Cell Plasticity, and Expression of a MitoticSignature with Prognostic Value

    Cell Reports, vol. 26, (no. 3), pp. 624–638
  • 2018
  • Bonetti P.iit, Climent M., Panebianco F., Tordonato C., Santoro A., Marzi M.J., Pelicci P.G., Ventura A., Nicassio F.
    DOI

    Dual role for miR-34 in the control of early progenitori proliferazione and committente in the mammari glandi and in breast cancer

    Oncogene
  • Culurgioni S., Mari S., Bonetti P.iit, Gallini S., Bonetti G., Brennich M., Round A., Nicassio F., Mapelli M.
    DOI

    Insc:LGN tetramers promote asymmetric divisions of mammary stem cells

    Nature Communications
  • 2016
  • Marzi M.J.iit, Ghini F.iit, Cerruti B.iit, De Pretis S.iit, Bonetti P.iit, Giacomelli C.iit, Gorski M.M., Kress T.iit, Pelizzola M.iit, Muller H.iit, Amati B.iit, Nicassio F.iit
    DOI

    Degradation dynamics of micrornas revealed by a novel pulse-chase approach

    Genome Research, vol. 26, (no. 4), pp. 554-565
  • 2015
  • Boi M., Gaudio E., Bonetti P.iit, Kwee I., Bernasconi E., Tarantelli C., Rinaldi A., Testoni M., Cascione L., Ponzoni M., Mensah A.A., Stathis A., Stussi G., Riveiro M.E., Herait P., Inghirami G., Cvitkovic E., Zucca E., Bertoni F.
    DOI

    The BET bromodomain inhibitor OTX015 affects pathogenetic pathways in preclinical B-cell tumor models and synergizes with targeted drugs

    Clinical Cancer Research, vol. 21, (no. 7), pp. 1628-1638
  • 2013
  • Bonetti P., Testoni M., Scandurra M., Ponzoni M., Piva R., Mensah A.A., Rinaldi A., Kwee I., Tibiletti M.G., Iqbal J., Greiner T.C., Chan W.-C., Gaidano G., Piris M.A., Cavalli F., Zucca E., Inghirami G., Bertoni F.
    DOI

    Deregulation of ETS1 and FLI1 contributes to the pathogenesis of diffuse large B-cell lymphoma

    Blood, vol. 122, (no. 13), pp. 2233-2241
  • Boi M., Rinaldi A., Kwee I., Bonetti P., Todaro M., Tabbo F., Piva R., Rancoita P.M.V., Matolcsy A., Timar B., Tousseyn T., Rodriguez-Pinilla S.M., Piris M.A., Bea S., Campo E., Bhagat G., Swerdlow S.H., Rosenwald A., Ponzoni M., Young K.H., Piccaluga P.P., Dummer R., Pileri S., Zucca E., Inghirami G., Bertoni F.
    DOI

    PRDM1/BLIMP1 is commonly inactivated in anaplastic large T-cell lymphoma

    Blood, vol. 122, (no. 15), pp. 2683-2693
  • 2011
  • Martinelli P., Bonetti P., Sironi C., Pruneri G., Fumagalli C., Raviele P.R., Volorio S., Pileri S., Chiarle R., McDuff F.K.E., Tusi B.K., Turner S.D., Inghirami G., Pelicci P.G., Colombo E.
    DOI

    The lymphoma-associated NPM-ALK oncogene elicits a p16INK4a/pRb-dependent tumor-suppressive pathway

    Blood, vol. 117, (no. 24), pp. 6617-6626
  • 2008
  • Bonetti P., Davoli T., Sironi C., Amati B., Pelicci P.G., Colombo E.
    DOI

    Nucleophosmin and its AML-associated mutant regulate c-Myc turnover through Fbw7γ

    Journal of Cell Biology, vol. 182, (no. 1), pp. 19-26
  • 2006
  • Colombo E., Martinelli P., Zamponi R., Shing D.C., Bonetti P., Luzi L., Volorio S., Bernard L., Pruneri G., Alcalay M., Pelicci P.G.
    DOI

    Delocalization and destabilization of the Arf tumor suppressor by the leukemia-associated NPM mutant

    Cancer Research, vol. 66, (no. 6), pp. 3044-3050
  • 2005
  • Colombo E., Bonetti P., Denchi E.L., Martinelli P., Zamponi R., Marine J.-C., Helin K., Falini B., Pelicci P.G.
    DOI

    Nucleophosmin is required for DNA integrity and p19Arf protein stability

    Molecular and Cellular Biology, vol. 25, (no. 20), pp. 8874-8886

Awards

PATENTS

2013 Patent application, International Patent Application No.PCT/EP2013/063313 “Method of treating B-cell malignant cancers and T-cell malignant cancers using thienotriazolodiazepine compounds”

 

PUBLICATIONS

Total: 12

First Author: 5 Last Author: 1

h-index:10

Citations: 714 (Scopus)