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Francesca Nadalin

Affiliated Researcher
Genomic Science
Research center
About

After an undergraduate training in Mathematics, I earned a PhD in Computer Science from the University of Udine, under the supervision of prof. Alberto Policriti, focusing on sequence bioinformatics and in particular on local de novo assembly approaches for short read sequencing data.
At Sorbonne Université, under the supervision of prof. Alessandra Carbone, I developed statistical potentials for predicting protein-protein binding modes; I also worked on the extraction of co-evolution patterns in highly conserved protein families.
More recently, I got interested in single-cell sequencing data analysis, thanks to a period spent at Institut Curie, which allowed me to work on several projects focused on the study of the cells of the immune system.
At CGS-IIT, in collaboration with EMBL-EBI, I develop computational methods for the analysis and integration of single-cell sequencing assays, with a specific focus on understanding drug resistance in cancer.


Education

Title: PhD in Computer Science
Institute: University of Udine
Location: Udine
Country: Italy
From: 2011 To: 2014

Title: Master Degree in Mathematics
Institute: University of Udine
Location: Udine
Country: Italy
From: 2007 To: 2010

Experience External

Title: Research engineer
Institute: Institut Curie
Location: Paris
Country: France
From: 2017 To: 2020

Title: Postdoc
Institute: Sorbonne Université
Location: Paris
Country: France
From: 2014 To: 2017

All Publications
2022
Oteri F., Sarti E., Nadalin F., Carbone A.
iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families
Nucleic Acids Research, pp. gkac481
Article Journal
2022
De Silva N., Nader G.P.F., Nadalin F., de Azevedo K., Couty M., Bhargava A., Conrad C., Maurin M., Fouillade C., Londono-Vallejo A., Behrendt R., Gallwitz L., Saftig P., Herrero Fernandez B., Gonzales-Granado J.M., Van Niel G., Boissonnas A., Piel M., Manel N.
Nuclear Envelope Disruption Triggers Hallmarks of Aging in Lung Alveolar Macrophages
SSRN Electronic Journal
Article Journal
2022
Brouiller F., Nadalin F., Aït Mohamed O., Bonté P., Delaugerre C., Lelièvre J-D., Ginhoux F., Ruffin N., Benaroch P.
Single-cell RNA-Seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells
bioRxiv
Article Journal
2021
Danko D., Bezdan D., Afshin E. E., Zhu S., Mso C.E., The International MetaSUB Consortium.
A global metagenomic map of urban microbiomes and antimicrobial resistance
Cell, vol. 184, pp. 1-18
2021
Döring M., De Azevedo K., Blanco-Rodriguez G., Nadalin F., Satoh T., Gentili M., Lahaye X., De Silva N.S., Conrad C., Jouve M., Centlivre M., Lévy Y., Manel N.
Single-cell analysis reveals divergent responses of human dendritic cells to the MVA vaccine
Science signaling, vol. 14, (no. 697), pp. eabd9720
Article Journal