Publications
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Kumar N.H., Kluever V., Barth E., Krautwurst S., Furlan M., Pelizzola M., Marz M., Fornasiero E.F.
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
Nucleic Acids Research, vol. 52, (no. 6), pp. 2865-2885
2024
Dermentzaki G., Furlan M., Tanaka I., Leonardi T., Rinchetti P., Passos P.M.S., Bastos A., Ayala Y.M., Hanna J.H., Przedborski S., Bonanomi D., Pelizzola M., Lotti F.
Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration
Cell Reports, vol. 43, (no. 4)
2022
Brancato V., Brentari I., Coscujuela Tarrero L., Furlan M., Nicassio F., Denti M.A.
News from around the RNA world: new avenues in RNA biology, biotechnology and therapeutics from the 2022 SIBBM meeting
Biology Open, vol. 11, (no. 10)
2021
Furlan M., Delgado-Tejedor A., Mulroney L., Pelizzola M., Novoa E.M., Leonardi T.
Computational methods for RNA modification detection from nanopore direct RNA sequencing data
RNA Biology, vol. 18, (no. S1), pp. 31-40
2021
de Pretis S., Furlan M., Pelizzola M.
Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma
Methods in molecular biology (Clifton, N.J.), vol. 2284, pp. 271-287
2020
Furlan M., Tanaka I., Leonardi T., de Pretis S., Pelizzola M.
Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts
Frontiers in Genetics, vol. 11
2020
Furlan M., de Pretis S., Pelizzola M.
Dynamics of transcriptional and post-transcriptional regulation
Briefings in Bioinformatics
2020
Furlan M., Galeota E., Del Gaudio N., Dassi E., Caselle M., de Pretis S., Pelizzola M.
Genome-wide dynamics of RNA synthesis, processing and degradation without RNA metabolic labeling
Genome Research
2020
de Pretis S., Furlan M., Pelizzola M.
INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species
Frontiers in Genetics, vol. 11
2019
Tesi A., de Pretis S., Furlan M., Filipuzzi M., Morelli M.J., Andronache A., Doni M., Verrecchia A., Pelizzola M., Amati B., Sabo A.
An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation
EMBO Reports, vol. 20, (no. 9)
2019
Furlan M., Galeota E., de Pretis S., Caselle M., Pelizzola M.
M6A-dependent RNA dynamics in T cell differentiation
Genes, vol. 10, (no. 1)