140 publications found

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  • 2020
    Ceddia G. , Martino L.N. , Parodi A. , Secchi P. , Campaner S.iit , Masseroli M.

    Association rule mining to identify transcription factor interactions in genomic regions

    Bioinformatics, vol. 36, (no. 4), pp. 1007-1013
    Article
  • 2020
    Wei Q. , Holle A. , Li J. , Posa F. , Biagioni F.iit , Croci O.iit , Benk A.S. , Young J. , Noureddine F. , Deng J. , Zhang M. , Inman G.J. , Spatz J.P. , Campaner S.iit , Cavalcanti-Adam E.A.

    BMP-2 Signaling and Mechanotransduction Synergize to Drive Osteogenic Differentiation via YAP/TAZ

    Advanced Science, vol. 7, (no. 15)
    Article
  • 2020
    Bonetti P.iit , Climent M.iit , Panebianco F.iit , Tordonato C. , Santoro A. , Marzi M.J.iit , Pelicci P.G. , Ventura A. , Nicassio F.iit

    Correction: Dual role for miR-34a in the control of early progenitor proliferation and commitment in the mammary gland and in breast cancer (Oncogene, (2019), 38, 3, (360-374), 10.1038/s41388-018-0445-3)

    Oncogene, vol. 39, (no. 10)
    Erratum
  • 2020
    Furlan M.iit , Tanaka I.iit , Leonardi T.iit , de Pretis S.iit , *Pelizzola M.iit

    Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts

    Frontiers in Genetics, vol. 11
    Article
  • 2020
    Mazzara P.G. , Muggeo S. , Luoni M. , Massimino L. , Zaghi M. , Valverde P.T.-T. , Brusco S. , Marzi M.J.iit , Palma C. , Colasante G. , Iannielli A. , Paulis M. , Cordiglieri C. , Giannelli S.G. , Podini P. , Gellera C. , Taroni F. , Nicassio F.iit , Rasponi M. , Broccoli V.

    Frataxin gene editing rescues Friedreich’s ataxia pathology in dorsal root ganglia organoid-derived sensory neurons

    Nature Communications, vol. 11, (no. 1)
    Article
  • 2020
    Furlan M. , Galeota E. , Del Gaudio N. , Dassi E. , Caselle M. , de Pretis S. , *Pelizzola M.iit

    Genome-wide dynamics of RNA synthesis, processing and degradation without RNA metabolic labeling

    Genome Research
    Article
  • 2020
    *de Pretis S.iit , Furlan M.iit , *Pelizzola M.iit

    INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species

    Frontiers in Genetics, vol. 11
    Article
  • 2020
    Blazevits O.iit , Bolshette N.iit , Vecchio D.iit , Guijarro A.iit , Croci O.iit , Campaner S.iit , *Grimaldi B.iit

    MYC-associated factor max is a regulator of the circadian clock

    International Journal of Molecular Sciences, vol. 21, (no. 7)
    Article
  • 2020
    Galeota E.iit , Kishore K.iit , *Pelizzola M.iit

    Ontology-driven integrative analysis of omics data through Onassis

    Scientific Reports, vol. 10, (no. 1)
    Article
  • 2020
    Spadotto V. , Giambruno R. , Massignani E. , Mihailovich M. , Maniaci M. , Patuzzo F. , Ghini F.iit , Nicassio F.iit , Bonaldi T.

    PRMT1-mediated methylation of the microprocessor-associated proteins regulates microRNA biogenesis

    Nucleic Acids Research, vol. 48, (no. 1), pp. 96-115
    Article
  • 2019
    Lepesant J.M.J. , Iampietro C. , Galeota E. , Auge B. , Aguirrenbengoa M. , Merce C. , Chaubet C. , Rocher V. , Haenlin M. , Waltzer L. , Pelizzola M.iit , Di Stefano L.

    A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons

    Nucleic Acids Research
    Article
  • 2019
    Tesi A.iit , de Pretis S.iit , Furlan M.iit , Filipuzzi M. , Morelli M.J.iit , Andronache A.iit , Doni M. , Verrecchia A. , Pelizzola M.iit , Amati B. , Sabo A.

    An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation

    EMBO Reports, vol. 20, (no. 9)
    Article
  • 2019
    *Leonardi T.iit

    Bedparse: feature extraction from BED files

    The journal of open source software, vol. 4, (no. 34), pp. 1228
    Article
  • 2019
    Bisso A. , Filipuzzi M. , Gamarra Figueroa G.P. , Brumana G.iit , Biagioni F.iit , Doni M. , Ceccotti G. , Tanaskovic N. , Morelli M.J.iit , Pendino V.iit , Chiacchiera F. , Pasini D. , Olivero D. , Campaner S.iit , Sabò A. , Amati B.

    Cooperation between MYC and B-catenin in liver tumorigenesis requires Yap/Taz

    Hepatology
    Article
  • 2019
    Panebianco F. , Climent M. , Malvindi M.A. , Pompa P.P. , Bonetti P.iit , *Nicassio F.iit

    Delivery of biologically active miR-34a in normal and cancer mammary epithelial cells by synthetic nanoparticles

    Nanomedicine: Nanotechnology, Biology, and Medicine, vol. 19, pp. 95-105
    Article
  • 2019
    Bonetti P.iit , Climent M.iit , Panebianco F.iit , Tordonato C. , Santoro A. , Marzi M.J.iit , Pelicci P.G. , Ventura A. , *Nicassio F.iit

    Dual role for miR-34a in the control of early progenitor proliferation and commitment in the mammary gland and in breast cancer

    Oncogene, vol. 38, (no. 3), pp. 360-374
    Article
  • 2019
    *Nicassio F.iit

    Killing miR-softly: new clues to miRNA degradation by RNA targets

    Non-coding RNA Investigation
    Editorial
  • 2019
    Rossi M. , Bucci G. , Rizzotto D. , Bordo D. , Marzi M.J.iit , Puppo M. , Flinois A. , Spadaro D. , Citi S. , Emionite L. , Cilli M. , Nicassio F.iit , Inga A. , Briata P. , Gherzi R.

    LncRNA EPR controls epithelial proliferation by coordinating Cdkn1a transcription and mRNA decay response to TGF-β

    Nature Communications, vol. 10, (no. 1)
    Article
  • 2019
    Furlan M.iit , Galeota E.iit , de Pretis S.iit , Caselle M. , *Pelizzola M.iit

    M6A-dependent RNA dynamics in T cell differentiation

    Genes, vol. 10, (no. 1)
    Article
  • 2019
    Lobo J. , Costa A.L. , Cantante M. , Guimaraes R. , Lopes P. , Antunes L. , Braga I. , Oliveira J. , Pelizzola M.iit , Henrique R. , Jeronimo C.

    M6A RNA modification and its writer/reader VIRMA/YTHDF3 in testicular germ cell tumors: A role in seminoma phenotype maintenance

    Journal of Translational Medicine, vol. 17, (no. 1)
    Article
  • 2019
    Madaro L. , Torcinaro A. , De Bardi M. , Contino F. F. , Pelizzola M.iit , Diaferia G. R. , Imeneo G. , Bouchè M. , Puri P. L. , De Santa F.

    Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice

    PLoS Genetics
    Article
  • 2019
    Pons-Espinal M. , Gasperini C. , Marzi M.J.iit , Braccia C.iit , Armirotti A.iit , Pötzsch A. , Walker T.L. , Fabel K. , Nicassio F.iit , Kempermann G. , *De Pietri Tonelli D.iit

    miR-135a-5p is critical for exercise-induced adult neurogenesis

    Stem Cell Reports
    Article in Press
  • 2019
    Pons-Espinal M.iit , Gasperini C.iit , Marzi M.J.iit , Braccia C.iit , Armirotti A.iit , Potzsch A. , Walker T.L. , Fabel K. , Nicassio F.iit , Kempermann G. , *De Pietri Tonelli D.iit

    MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis

    Stem Cell Reports, vol. 12, (no. 6), pp. 1298-1312
    Article
  • 2019
    Santoro A. , Vlachou T. , Luzi L. , Melloni G.iit , Mazzarella L. , D'Elia E. , Aobuli X. , Pasi C.E. , Reavie L. , Bonetti P.iit , Punzi S. , Casoli L.iit , Sabo A.iit , Moroni M.C. , Dellino G.I. , Amati B.iit , Nicassio F.iit , Lanfrancone L. , Pelicci P.G.

    p53 Loss in Breast Cancer Leads to Myc Activation, Increased Cell Plasticity, and Expression of a Mitotic Signature with Prognostic Value

    Cell Reports, vol. 26, (no. 3), pp. 624-638.e8
    Article
  • 2019
    Leger A. , Leonardi T.iit

    pycoQC, interactive quality control for Oxford Nanopore Sequencing

    The journal of open source software, vol. 4, (no. 34), pp. 1236
    Article