128 publications found

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  • 2019
    Tesi A.iit , de Pretis S.iit , Furlan M.iit , Filipuzzi M. , Morelli M.J.iit , Andronache A.iit , Doni M. , Verrecchia A. , Pelizzola M.iit , Amati B. , Sabo A.

    An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation

    EMBO Reports, vol. 20, (no. 9)
    Article
  • 2019
    Ceddia G. , Martino L.N. , Parodi A. , Secchi P. , Campaner S.iit , Masseroli M.

    Association rule mining to identify transcription factor interactions in genomic regions

    Bioinformatics
    Article in Press
  • 2019
    *Leonardi T.iit

    Bedparse: feature extraction from BED files

    The journal of open source software, vol. 4, (no. 34), pp. 1228
    Article
  • 2019
    Panebianco F. , Climent M. , Malvindi M.A. , Pompa P.P.iit , Bonetti P. , *Nicassio F.iit

    Delivery of biologically active miR-34a in Normal and Cancer mammary epithelial cells by synthetic nanoparticles

    Nanomedicine
    Article
  • 2019
    Bonetti P.iit , Climent M.iit , Panebianco F.iit , Tordonato C. , Santoro A. , Marzi M.J.iit , Pelicci P.G. , Ventura A. , *Nicassio F.iit

    Dual role for miR-34a in the control of early progenitor proliferation and commitment in the mammary gland and in breast cancer

    Oncogene, vol. 38, (no. 3), pp. 360-374
    Article
  • 2019
    *Nicassio F.iit

    Killing miR-softly: new clues to miRNA degradation by RNA targets

    Non-coding RNA Investigation
    Editorial
  • 2019
    Rossi M. , Bucci G. , Rizzotto D. , Bordo D. , Marzi M.J. , Puppo M. , Flinois A. , Spadaro D. , Citi S. , Emionite L. , Cilli M. , Nicassio F.iit , Inga A. , Briata P. , Gherzi R.

    LncRNA EPR controls epithelial proliferation by coordinating Cdkn1a transcription and mRNA decay response to TGF-β.

    Nature Communications
    Article
  • 2019
    Furlan M.iit , Galeota E.iit , de Pretis S.iit , Caselle M. , *Pelizzola M.iit

    M6A-dependent RNA dynamics in T cell differentiation

    Genes, vol. 10, (no. 1)
    Article
  • 2019
    Lobo J. , Costa A.L. , Cantante M. , Guimaraes R. , Lopes P. , Antunes L. , Braga I. , Oliveira J. , Pelizzola M.iit , Henrique R. , Jeronimo C.

    M6A RNA modification and its writer/reader VIRMA/YTHDF3 in testicular germ cell tumors: A role in seminoma phenotype maintenance

    Journal of Translational Medicine, vol. 17, (no. 1)
    Article
  • 2019
    Madaro L. , Torcinaro A. , De Bardi M. , Contino F. F. , Pelizzola M.iit , Diaferia G. R. , Imeneo G. , Bouchè M. , Puri P. L. , De Santa F.

    Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice

    PLoS Genetics
    Article
  • 2019
    Pons-Espinal M. , Gasperini C. , Marzi M.J. , Braccia C.iit , Armirotti A.iit , Pötzsch A. , Walker T.L. , Fabel K. , Nicassio F.iit , Kempermann G. , *De Pietri Tonelli D.iit

    miR-135a-5p is critical for exercise-induced adult neurogenesis

    Stem Cell Reports
    Article in Press
  • 2019
    Pons-Espinal M.iit , Gasperini C.iit , Marzi M.J.iit , Braccia C.iit , Armirotti A.iit , Potzsch A. , Walker T.L. , Fabel K. , Nicassio F.iit , Kempermann G. , *De Pietri Tonelli D.iit

    MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis

    Stem Cell Reports, vol. 12, (no. 6), pp. 1298-1312
    Article
  • 2019
    Santoro A. , Vlachou T. , Luzi L. , Melloni G.iit , Mazzarella L. , D'Elia E. , Aobuli X. , Pasi C.E. , Reavie L. , Bonetti P.iit , Punzi S. , Casoli L.iit , Sabo A.iit , Moroni M.C. , Dellino G.I. , Amati B.iit , Nicassio F.iit , Lanfrancone L. , Pelicci P.G.

    p53 Loss in Breast Cancer Leads to Myc Activation, Increased Cell Plasticity, and Expression of a Mitotic Signature with Prognostic Value

    Cell Reports, vol. 26, (no. 3), pp. 624-638.e8
    Article
  • 2019
    Leger A. , Leonardi T.iit

    pycoQC, interactive quality control for Oxford Nanopore Sequencing

    The journal of open source software, vol. 4, (no. 34), pp. 1236
    Article
  • 2019
    Barca-Mayo O.iit , Marzi M. J.iit , Nicassio F.iit , *De Pietri Tonelli D.iit

    Rhythmic miRNA expression in the mammalian brain: importance of miRNA biogenesis and decay

    Keystone Symposia: Small Regulatory RNAs (D7)
    Poster
  • 2019
    Leonardi T.iit , Leger A. , Amaral P. , Che H. , Pandolfini L. , Santo Rosa H. , Enright A.J. , Fitzgerlad T. , Birney E. , Kouzarides T.

    Signal level RNA modifications detection in eukaryotic ncRNAs

    Oxford Nanopore Technologies London Calling Conference
    Poster
  • 2018
    Yizhar-Barnea O. , Valensisi C. , Jayavelu N.D. , Kishore K.iit , Andrus C. , Koffler-Brill T. , Ushakov K. , Perl K. , Noy Y. , Bhonker Y. , Pelizzola M.iit , Hawkins R.D. , Avraham K.B.

    DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium

    Scientific Reports, vol. 8, (no. 1)
    Article
  • 2018
    Sivade Dumousseau M. , Alonso-Lopez D. , Ammari M. , Bradley G. , Campbell N.H. , Ceol A.iit , Cesareni G. , Combe C. , De Las Rivas J. , del-Toro N. , Heimbach J. , Hermjakob H. , Jurisica I. , Koch M. , Licata L. , Lovering R.C. , Lynn D.J. , Meldal B.H.M. , Micklem G. , Panni S. , Porras P. , Ricard-Blum S. , Roechert B. , Salwinski L. , Shrivastava A. , Sullivan J. , Thierry-Mieg N. , Yehudi Y. , Van Roey K. , Orchard S.

    Encompassing new use cases - Level 3.0 of the HUPO-PSI format for molecular interactions

    BMC Bioinformatics, vol. 19, (no. 1)
    Article
  • 2018
    Ghini F.iit , Rubolino C.iit , Climent M.iit , Simeone I.iit , *Marzi M.J.iit , *Nicassio F.iit

    Endogenous transcripts control miRNA levels and activity in mammalian cells by target-directed miRNA degradation

    Nature Communications, vol. 9, (no. 1)
    Article
  • 2018
    Kishore K.iit , *Pelizzola M.iit

    Identification of differentially methylated regions in the genome of Arabidopsis thaliana

    Methods in molecular biology (Clifton, N.J.), vol. 1675, pp. 61-69
    Book Chapter
  • 2018
    Culurgioni S. , Mari S. , Bonetti P.iit , Gallini S. , Bonetto G. , Brennich M. , Round A. , Nicassio F.iit , Mapelli M.

    Insc:LGN tetramers promote asymmetric divisions of mammary stem cells

    Nature Communications, vol. 9, (no. 1)
    Article
  • 2018
    Matteucci E. , Maroni P. , Nicassio F.iit , Ghini F.iit , Bendinelli P. , Desiderio M.A.

    Microenvironment stimuli HGF and hypoxia differently affected miR-125b and Ets-1 function with opposite effects on the invasiveness of bone metastatic cells: A comparison with breast carcinoma cells

    International Journal of Molecular Sciences, vol. 19, (no. 1)
    Article
  • 2018
    Jantsch M.F. , Quattrone A. , O'Connell M. , Helm M. , Frye M. , Macias-Gonzales M. , Ohman M. , Ameres S. , Willems L. , Fuks F. , Oulas A. , Vanacova S. , Nielsen H. , Bousquet-Antonelli C. , Motorin Y. , Roignant J.-Y. , Balatsos N. , Dinnyes A. , Baranov P. , Kelly V. , Lamm A. , Rechavi G. , Pelizzola M.iit , Liepins J. , Holodnuka Kholodnyuk I. , Zammit V. , Ayers D. , Drablos F. , Dahl J.A. , Bujnicki J. , Jeronimo C. , Almeida R. , Neagu M. , Costache M. , Bankovic J. , Banovic B. , Kyselovic J. , Valor L.M. , Selbert S. , Pir P. , Demircan T. , Cowling V. , Schafer M. , Rossmanith W. , Lafontaine D. , David A. , Carre C. , Lyko F. , Schaffrath R. , Schwartz S. , Verdel A. , Klungland A. , Purta E. , Timotijevic G. , Cardona F. , Davalos A. , Ballana E. , OCarroll D. , Ule J. , Fray R.

    Positioning Europe for the EPITRANSCRIPTOMICS challenge

    RNA Biology, vol. 15, (no. 6), pp. 829-831
    Note
  • 2018
    Banfi S. , D'Antona G. , Ruocco C. , Meregalli M. , Belicchi M. , Bella P. , Erratico S. , Donato E.iit , Rossi F. , Bifari F. , Lonati C. , Campaner S.iit , Nisoli E. , Torrente Y.

    Supplementation with a selective amino acid formula ameliorates muscular dystrophy in mdx mice

    Scientific Reports, vol. 8, (no. 1)
    Article
  • 2018
    *Nicassio F.iit

    Target-directed miRNA degradation in mammalian cells

    EMBO | EMBL Symposium: The Complex Life of RNA
    Poster