IIT Publications Search

Publications
2024
Mulroney L., Coscujuela-Tarrero L., Maragno P., Rubolino C., Maestri S., Furlan M., Marzi M.J., Fitzgerald T., Leonardi T., Pelizzola M., Birney E., Nicassio F.
A comprehensive survey of RNA modifications in a human transcriptome
bioRxiv
2024
Marzi M.J., Rubolino C., D'Onghia M., Tordonato C., Giuliani B., Nicassio F.
AEGEAN AWARD: Canonical and non-canonical Target-Directed MicroRNA Degradation controls cell fitness and transcriptional plasticity in breast cancer
5th International Aegean Conference on the Long and the Short of Non-Coding RNAs
Poster Conference
2024
Finocchiaro C., Giuliani B., Marzi M.J., Nicassio F.
A systematic interrogation of lncRNAs in the context of triple-negative breast cancer
ABCD 2024 RNA Biology and Systems Medicine
Poster Conference
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Yip C.W., Parr C., Takahashi H., Yasuzawa K., Valentine M., Nishiyori-Sueki H., Ugolini C., Ranzani V., Murata M., Kato M., Kang W., Yip W.H., Shibayama Y., Sim A.D., Chen Y., Shu X., Moody J.D., Umarov R., Chang J., Pandolfini L., Kawashima T., Tagami M., Nobusada T., Kouno T., Gonzalez C.A., Albanese R., Dossena R., Haberman N., Ozaki K., Kasukawa T., Lenhard B., Frith M., Bodega B., Nicassio F., Calviello L., Bienko M., Legnini I., Hilgers V., Gustincich S., Goeke J., Lecellier C.H., Shin J.W., Hon C., Carninci P.
CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription.
Biorxiv
Article E-print Archive
2024
Zerbib J., Ippolito M.R., Eliezer Y., De Feudis G., Reuveni E., Savir Kadmon A., Martin S., Vigano S., Leor G., Berstler J., Muenzner J., Mulleder M., Campagnolo E.M., Shulman E.D., Chang T., Rubolino C., Laue K., Cohen-Sharir Y., Scorzoni S., Taglietti S., Ratti A., Stossel C., Golan T., Nicassio F., Ruppin E., Ralser M., Vazquez F., Ben-David U., Santaguida S.
Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage
Nature Communications, vol. 15, (no. 1)
2024
Ippolito M.R., Zerbib J., Eliezer Y., Reuveni E., Vigano S., De Feudis G., Shulman E.D., Kadmon A.S., Slutsky R., Chang T., Campagnolo E.M., Taglietti S., Scorzoni S., Gianotti S., Martin S., Muenzner J., Mulleder M., Rozenblum N., Rubolino C., Ben-Yishay T., Laue K., Cohen-Sharir Y., Vigorito I., Nicassio F., Ruppin E., Ralser M., Vazquez F., Santaguida S., Ben-David U.
Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells
Cancer Discovery, vol. 14, (no. 12), pp. 2532-2553
2024
Pirra Piscazzi M., Marzi M.J., Nicassio F.
Multi-omic lineage tracing predicts the molecular drivers of cancer stem cells in Triple-Negative Breast Cancer evolution
PhD Thesis Book
2024
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes-Bravo P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
Nature Communications, vol. 15, (no. 1)
2024
Ugolini C., Leonardi T., Marzi M.J., Nicassio F.
NANOPORE SEQUENCING AS A NEW TOOL TO EXPLORE COMPLEX TRANSCRIPTOMES
PhD Thesis Book
2024
Champroux A., Tang Y., Dickson D.A., Meng A., Harrington A., Liaw L., Marzi M., Nicassio F., Schlaeger T.M., Feig L.A.
Transmission of reduced levels of miR-34/449 from sperm to preimplantation embryos is a key step in the transgenerational epigenetic inheritance of the effects of paternal chronic social instability stress
Epigenetics, vol. 19, (no. 1)
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
Discovering host protein interactions specific for SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids
DOI 10.1101/2022.07.18.499583 Article in Press Journal
2023
Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Rita Giuffre M., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis
Mucosal Immunology, vol. 16, (no. 3), pp. 326-340
2023
Giuliani B., Tordonato C., Nicassio F.
Mechanisms of Long Non-Coding RNA in Breast Cancer
International Journal of Molecular Sciences, vol. 24, (no. 5)
2023
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
bioRxiv